PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G285300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 321aa    MW: 34540.1 Da    PI: 11.189
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G285300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.4e-312376255
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          prlrWt+eLH++Fv+av+ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR+
  Sobic.004G285300.2.p 23 PRLRWTSELHRNFVRAVDCLGGQDKATPKLILQLMGVRGLTIAHVKSHLQMYRS 76
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.161979IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-311977IPR009057Homeodomain-like
SuperFamilySSF466895.2E-162176IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-242376IPR006447Myb domain, plants
PfamPF002498.0E-82475IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGGAAGGGRN GAATRRYNRS KVPRLRWTSE LHRNFVRAVD CLGGQDKATP KLILQLMGVR  60
GLTIAHVKSH LQMYRSSGHD IRKREMQPRL RHLKHSFTID EGGPKEFICP PMKRAEAAGP  120
EAAATATATH ESMQGNSDMG APGTRRCGDD YTRAIPMGSS RRITEGLGGW QQWQRDAAAR  180
AATAASTLRE LGFWVRGTEE PFKVRQTGRP IANRHSPVAR QLSSKEIKGE NGRFLCGTAA  240
ATRDEAAARR RSPSSRPPAS SIDPKAVAAV SWWPSEEGGC VLPPLSSSTS LSACSGPSGS  300
CIFARQRRVN LDLSLSICGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G285300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313833.10.0uncharacterized protein LOC8076046
TrEMBLA0A194YS670.0A0A194YS67_SORBI; Uncharacterized protein
STRINGSb04g032130.11e-159(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Representative plantOGRP1974722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-24G2-like family protein