PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G296900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 343aa    MW: 36223.4 Da    PI: 6.513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G296900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20152203256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  Sobic.004G296900.1.p 152 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 203
                           8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-32151211IPR001471AP2/ERF domain
PfamPF008471.6E-14152202IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22152211IPR016177DNA-binding domain
PROSITE profilePS5103224.25152210IPR001471AP2/ERF domain
CDDcd000183.65E-31152211No hitNo description
SMARTSM003808.5E-38152216IPR001471AP2/ERF domain
PRINTSPR003672.1E-13153164IPR001471AP2/ERF domain
PRINTSPR003672.1E-13192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDFSGEIDDF SLQLIREQLL GGEACLPVVP NAAAYSGLSV HPTQAAFHQH AAAFLPQHQQ  60
QQVAYVDLTN EYAADAATAA SHGEAAAFRA EPVMIRFGGE PSPVSDPSRR PMLTISLPPT  120
SHAWGPAGAV EVQVQAQAAA AAALVDVNDF RKYRGVRQRP WGKFAAEIRD PKKRGSRVWL  180
GTYDTAIEAA RAYDRAAFRM RGAKAILNFP NEVGSRGADF LAPPPPPPPA QAAATTTSSQ  240
NKRKLPHDAE SEPAANKSVK AEAFGSPASS PATTTTTTTT TTTTAASTVT TCSPSSEATG  300
AHHEVFPMTP SSWTWEQLEG VFGSLSPLSP HPQLGFPEVT VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-28153215668ATERF1
3gcc_A5e-28153215668ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G296900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0840560.0BT084056.1 Zea mays full-length cDNA clone ZM_BFb0069B11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315889.10.0ethylene-responsive transcription factor 5
TrEMBLA0A194YS800.0A0A194YS80_SORBI; Uncharacterized protein
STRINGGRMZM2G057386_P011e-159(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-23ERF family protein