PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G298400.1.p
Common NameSb04g033240, SORBIDRAFT_04g033240
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 239aa    MW: 26109.6 Da    PI: 8.1645
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G298400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31162220159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vk+s +prsY+rCt+++C+vkk+ver ++d ++v +tYeg+H+h+
  Sobic.004G298400.1.p 162 LDDGYKWRKYGQKVVKNSLHPRSYFRCTHSNCRVKKRVERLSTDCRMVMTTYEGRHTHS 220
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-32147220IPR003657WRKY domain
SuperFamilySSF1182908.63E-28154220IPR003657WRKY domain
PROSITE profilePS5081128.254157219IPR003657WRKY domain
SMARTSM007743.9E-37162221IPR003657WRKY domain
PfamPF031062.1E-24163219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MQAYMEGGQL SACLPGFLVP DHYAFPLPLP LQLPSSQNKL FQMPFVVDQE AETENHGGGG  60
MLSSDHCGLY PLPALPFGSC SGAAGAATAC GGKPTAGFMP SAIVAEEVCT SVTTKLGCND  120
SNGTWWKGSA ATTIAERGKM KVRRKMREPR FCFQTRSDVD VLDDGYKWRK YGQKVVKNSL  180
HPRSYFRCTH SNCRVKKRVE RLSTDCRMVM TTYEGRHTHS PCSDDASSAD HTDCFTSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-25153219874Probable WRKY transcription factor 4
2lex_A7e-25153219874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G298400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1915970.0KC191597.1 Miscanthus lutarioriparius zinc finger transcription factor WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452824.20.0probable WRKY transcription factor 57
TrEMBLA0A194YS881e-179A0A194YS88_SORBI; Uncharacterized protein
STRINGSb04g033240.11e-177(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.14e-60WRKY family protein