PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G300500.3.p
Common NameSb04g033390, SORBIDRAFT_04g033390
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 510aa    MW: 54880.3 Da    PI: 5.048
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G300500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix109.32.4e-34231316187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+k+ev aLi++r+e++e++ ++  k+plWe++++ mr+ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ql+a
  Sobic.004G300500.3.p 231 RWPKEEVEALIQMRNEKDEQYHDAGGKGPLWEDIAAGMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHQLDA 316
                           8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.072224288IPR017877Myb-like domain
SMARTSM007172.8E-6228290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-5230287IPR009057Homeodomain-like
PfamPF138377.0E-23230317No hitNo description
SuperFamilySSF466891.04E-5230304IPR009057Homeodomain-like
CDDcd122035.80E-26231295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSMTTVQAGP HQPMAMAWTA GPSALGPPAG AGLPDLSFSS MSGSESESDS YSDDYDYDDS  60
DAGEEGLGRE QGLGRGECDR EMMAIFEGMM KQVTEKQDAM QRVFLETLER WEAERTAREE  120
AWRRQEVARM NREREQLARE RAAAASRDAA LIAFLQRVGG GQGQPVARLP PHSAGVVPAP  180
PIPDHTPSSP RRHDAAAAAT YLQQLVPTSH KAVEALTWTG GEGSGSTSSS RWPKEEVEAL  240
IQMRNEKDEQ YHDAGGKGPL WEDIAAGMRR IGYNRSAKRC KEKWENINKY YKKVKESNKR  300
RPEDSKTCPY FHQLDAMYSK KHRAGGGRGS SRTAPAANMA TAVTVAVAVA AAVQDNPSQR  360
ELEGKSSNDV DHRKNDELGN VQASPGNGDT APTTTTPPGD GAKNKTAEDN VTETNVQHQQ  420
QQQQGFSADE TDSDDDINMA RDYTVYTEEG NDEDKMKYKM GVQKPDVIGS SGNVPASPPA  480
PAPAPAAPVT AAAPTSSAAP TGSTFLAVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G300500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9472750.0EU947275.1 Zea mays clone 336252 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452839.10.0trihelix transcription factor GTL1 isoform X2
TrEMBLA0A1Z5RPR60.0A0A1Z5RPR6_SORBI; Uncharacterized protein
STRINGSb04g033390.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-44Trihelix family protein