PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G301100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 478aa    MW: 49752.3 Da    PI: 8.1872
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G301100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.3e-19371405135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Sobic.004G301100.1.p 371 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 405
                           *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.2E-17365419IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.347365401IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-14367428No hitNo description
Gene3DG3DSA:3.30.50.102.3E-15369403IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.38E-15370427No hitNo description
PROSITE patternPS003440371396IPR000679Zinc finger, GATA-type
PfamPF003203.5E-17371405IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MTHQTTLLIA STLAAAFSPA SHHAGSSPLF FTRSSSSSSC SPPAMASFVA HHHGSLLERE  60
GMMSSALALR SSLRPCEAAA DEVAAAGPAA ADRGVAVFAD EFSVEDLLDL EDLCEVDNDC  120
CAELGGDAAP APGAVEDEDK LSSDSHGSSS VVSYELMTLP VPHQMIDLPL PAHDAEELEW  180
VSRIMDDSLA ELPPPPKLPA AALGPTAVRR PLLEGAAAAG PAMRRSPTPT ICALSTEALV  240
PVKAKRSKRS RASVWSLSGG GAGAPLSEST TSSSSTTTTS SCTSSSASFS PLLLLPAADS  300
SPLLLSSSQL LVDETTPRPP KKKSKHGKHG SKSGGKPKKR GRKPKKHHPR PPQFGGAGSA  360
PATAQQGDRR CSHCGVQKTP QWRAGPEGAK TLCNACGVRY KSGRLLPEYR PACSPTFESS  420
IHSNSHRKVL EMRRKKEGED GLGPLLPPVP AAAPLGLGPA VVRPTQYIFS SLPGWNY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.75400.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G301100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313901.10.0GATA transcription factor 6-like
TrEMBLA0A194YSE80.0A0A194YSE8_SORBI; Uncharacterized protein
STRINGSb04g033450.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5