PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G301100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 417aa    MW: 43461.3 Da    PI: 8.2175
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G301100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.8e-19310344135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Sobic.004G301100.2.p 310 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 344
                           *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.2E-17304358IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.347304340IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14306367No hitNo description
Gene3DG3DSA:3.30.50.101.9E-15308342IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.33E-14309366No hitNo description
PROSITE patternPS003440310335IPR000679Zinc finger, GATA-type
PfamPF003202.9E-17310344IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMSSALALRS SLRPCEAAAD EVAAAGPAAA DRGVAVFADE FSVEDLLDLE DLCEVDNDCC  60
AELGGDAAPA PGAVEDEDKL SSDSHGSSSV VSYELMTLPV PHQMIDLPLP AHDAEELEWV  120
SRIMDDSLAE LPPPPKLPAA ALGPTAVRRP LLEGAAAAGP AMRRSPTPTI CALSTEALVP  180
VKAKRSKRSR ASVWSLSGGG AGAPLSESTT SSSSTTTTSS CTSSSASFSP LLLLPAADSS  240
PLLLSSSQLL VDETTPRPPK KKSKHGKHGS KSGGKPKKRG RKPKKHHPRP PQFGGAGSAP  300
ATAQQGDRRC SHCGVQKTPQ WRAGPEGAKT LCNACGVRYK SGRLLPEYRP ACSPTFESSI  360
HSNSHRKVLE MRRKKEGEDG LGPLLPPVPA AAPLGLGPAV VRPTQYIFSS LPGWNY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.75400.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G301100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313901.10.0GATA transcription factor 6-like
TrEMBLA0A194YSA10.0A0A194YSA1_SORBI; Uncharacterized protein
TrEMBLA0A194YSE80.0A0A194YSE8_SORBI; Uncharacterized protein
STRINGSb04g033450.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-40GATA transcription factor 5