PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G311300.4.p

Common Name

Sb04g034360, Sb04g034370, SORBIDRAFT_04g034360, SORBIDRAFT_04g034370

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GeBP

Protein Properties

Length: 309aa MW: 33355.7 Da PI: 10.7351

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G311300.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	44.8	3.4e-14	123	191	3	70
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvk 70 +q+ ws++De +lL + + f++++g p d+ +++e +++sis+++ + + Ki+rLK Kf++ + Sobic.004G311300.4.p 123 AQKQWSDDDEFTLLTAAVAFRERNGRAPRLpDMAELFESIRDSISSHIDQFMVYYKIKRLKSKFQHSSG 191 6899********************88877*******************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.5E-12	124	190	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MSSGRPSESA MDADAAPAAS FPLRSKKRLP RTGDGNSSPN PSPRGSPARG SELKRRRRTS 60 AESAALALAT AAARASASGV RSDAGDGAVE RRRRPRARAE GGDGAIRMLG AAAARVGGGR 120 GAAQKQWSDD DEFTLLTAAV AFRERNGRAP RLPDMAELFE SIRDSISSHI DQFMVYYKIK 180 RLKSKFQHSS GPRDRRLRDL CSVLWGVGVV PSSEEDSDVG ERRAVPDAAA MMPVVTEVLG 240 EYWKTNERAM AGVSLEKGLS LLGKKEGRLI ETKWRQQLDQ EMQSQMRRHD LAKEVCGLLT 300 DAIKGLGP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.11324	0.0	leaf\| ovary

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G311300.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041681	0.0	BT041681.1 Zea mays full-length cDNA clone ZM_BFb0030N03 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021314306.1	0.0	probable transcription factor At4g00390
TrEMBL	A0A1Z5RQX6	0.0	A0A1Z5RQX6_SORBI; Uncharacterized protein
STRING	Sb04g034360.1	0.0	(Sorghum bicolor)
STRING	Sb04g034370.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01370.1	1e-08	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sobic.004G311300.4.p
Entrez Gene	8078935 \| 8078936