PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G319700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 240aa    MW: 24955.6 Da    PI: 5.2874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G319700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-152170255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++kGVr +k +g+Wv+eIr p++   r r++lg+++ +++Aa+a +aa  +l+g
  Sobic.004G319700.1.p 21 KFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDAPDKAARAFDAAFVCLRG 70
                          89****999.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-252083IPR001471AP2/ERF domain
PROSITE profilePS5103221.1012181IPR001471AP2/ERF domain
PfamPF008476.8E-82168IPR001471AP2/ERF domain
CDDcd000187.60E-232183No hitNo description
SuperFamilySSF541716.08E-172183IPR016177DNA-binding domain
SMARTSM003801.3E-272187IPR001471AP2/ERF domain
PRINTSPR003677.8E-82233IPR001471AP2/ERF domain
PRINTSPR003677.8E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSSSPETEAA SSSSSSSSSR KFKGVRKRKW GKWVSEIRLP NSRERIWLGS YDAPDKAARA  60
FDAAFVCLRG RGAAGADLNF PDSPPPCRAG GCSSDPREVQ AAALSHANRA AVTAQQAAAA  120
LIMDADADIG GGCGSAPPWD YYYSVAHDAG GGVVLGGGAA TSAAEVVAPV RADGSIDWRP  180
VMAHPPPLFS PTGWGSNAYD FLQVPPPAAA VVDEDMDDGI HGASASLWSF DSRDSYFRY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228KGVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G319700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315850.11e-171dehydration-responsive element-binding protein 1I
TrEMBLA0A194YSQ61e-169A0A194YSQ6_SORBI; Uncharacterized protein
STRINGGRMZM2G097081_P011e-129(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-22ERF family protein