PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G338800.1.p
Common NameSb04g036640, SORBIDRAFT_04g036640
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 304aa    MW: 33740 Da    PI: 7.1721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G338800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.41.7e-50101451128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           lppGfrF P+deelv++yL+ kv++++l  + + + evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgk
  Sobic.004G338800.1.p  10 LPPGFRFYPSDEELVCHYLHGKVANERLAGAGAaMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGK 98 
                           79*************************8776666***************87788999******************************** PP

                   NAM  89 dkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           d+ +++        +++ vg++ktLvfy+grap+g kt+Wvmhe+r+
  Sobic.004G338800.1.p  99 DRVIHNPragghhhHRAIVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 145
                           *****9988777666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-597164IPR003441NAC domain
PROSITE profilePS5100556.45210164IPR003441NAC domain
PfamPF023653.0E-2711145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHG KVANERLAGA GAAMVEVDLH THEPWELPDV  60
AKLSTNEWYF FSFRDRKYAT GLRTNRATKS GYWKATGKDR VIHNPRAGGH HHHRAIVGMR  120
KTLVFYRGRA PNGIKTSWVM HEFRMENPHT PPKEDWVLCR VFYKKKADAM DYAMADSEQD  180
VGMHMPRGGA DSSSYSPPPF PALGGSHFHH HHLTPLTDHH GGGCLNNEFP GMAALLQHNN  240
GMFDPHVVQP HLHDSVVLAG PPAAAAAAGS TRDGGEQCGS GVLMDLGLDE HYTYNSYNSL  300
LQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-4711694169NO APICAL MERISTEM PROTEIN
1ut4_B3e-4711694169NO APICAL MERISTEM PROTEIN
1ut7_A3e-4711694169NO APICAL MERISTEM PROTEIN
1ut7_B3e-4711694169NO APICAL MERISTEM PROTEIN
3swm_A4e-4711697172NAC domain-containing protein 19
3swm_B4e-4711697172NAC domain-containing protein 19
3swm_C4e-4711697172NAC domain-containing protein 19
3swm_D4e-4711697172NAC domain-containing protein 19
3swp_A4e-4711697172NAC domain-containing protein 19
3swp_B4e-4711697172NAC domain-containing protein 19
3swp_C4e-4711697172NAC domain-containing protein 19
3swp_D4e-4711697172NAC domain-containing protein 19
4dul_A3e-4711694169NAC domain-containing protein 19
4dul_B3e-4711694169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.129220.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G338800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649730.0EU964973.1 Zea mays clone 282884 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454749.10.0NAC domain-containing protein 92
TrEMBLC5XV730.0C5XV73_SORBI; Uncharacterized protein
STRINGSb04g036640.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-79NAC domain containing protein 74