PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G349237.1.p
Common NameSb04g037590, SORBIDRAFT_04g037590
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 194aa    MW: 20079.9 Da    PI: 5.3013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G349237.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-055779123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ykC+ C + F++   L  H+++H
  Sobic.004G349237.1.p 57 YKCTFCRRGFPTAQALGGHMNVH 79
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-65483No hitNo description
Gene3DG3DSA:3.30.160.603.7E-45581IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.6E-65781IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5335784IPR007087Zinc finger, C2H2
SMARTSM003550.00615779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MELGPERKDD EGAGARASPS ASSPSCEADD NKDLPKQQQR AIGGGGGDDD EGTRQPYKCT  60
FCRRGFPTAQ ALGGHMNVHR RHRGRPAAVS AGAASVYDYD QQPCSTMTTS TTPVLAFAQQ  120
ATTTTRPAAG ALHAQRKPHE LLPLFGRGDC CSAGRGSGAA AGDVREDGYF AIAEEGDGGE  180
ELDLELRLGS AGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G349237.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454798.11e-138transcriptional regulator SUPERMAN
TrEMBLC5XW011e-137C5XW01_SORBI; Uncharacterized protein
STRINGSb04g037590.11e-137(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-12C2H2 family protein