PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G353650.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

MYB

Protein Properties

Length: 175aa MW: 19800.6 Da PI: 11.1556

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G353650.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	8.9e-17	25	71	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +WT+eEd +l ++ k+ G g+W+++ar m+ gR++ +c++rw+ +l Sobic.004G353650.1.p 25 AWTPEEDARLRRLAKENGFGHWHRVARGMPaPGRSARSCRHRWRHHL 71 7******************************************9886 PP
2	Myb_DNA-binding	26.7	1.3e-08	79	121	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ +de l ++v+++G ++Wk + r + gRt k rw+ Sobic.004G353650.1.p 79 PFTARDDEELRRLVARHGARRWKDVGRAVY-GRTSRVMKQRWRE 121 79*************************9.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.296	19	75	IPR017930	Myb domain
SMART	SM00717	3.9E-13	22	73	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.35E-15	24	81	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-17	25	83	IPR009057	Homeodomain-like
CDD	cd00167	9.48E-13	25	71	No hit	No description
Pfam	PF00249	1.2E-14	25	71	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.67E-10	75	124	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-4	76	125	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	10.247	77	127	IPR017930	Myb domain
CDD	cd00167	9.46E-7	79	122	No hit	No description
Pfam	PF00249	1.5E-6	79	121	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-9	84	121	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEESACSAGA PGTTGIVVRL RLPRAWTPEE DARLRRLAKE NGFGHWHRVA RGMPAPGRSA 60 RSCRHRWRHH LARDVYHRPF TARDDEELRR LVARHGARRW KDVGRAVYGR TSRVMKQRWR 120 EIRETTTATV QQRPGCYYDA DDILASTFAS CNLAMDAMDP RAGSLALGFA CMAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-14	26	151	9	135	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-14	26	151	9	135	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G353650.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021315306.1	1e-125	transcription factor MYB44-like
TrEMBL	A0A1Z5RQH7	1e-123	A0A1Z5RQH7_SORBI; Uncharacterized protein
STRING	OGLUM07G11720.1	8e-61	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12569	20	35
Representative plant	OGRP10428	3	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	2e-20	myb domain protein r1

Link Out ? help Back to Top
Phytozome	Sobic.004G353650.1.p