PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G354301.1.p
Common NameSb04g038100, SORBIDRAFT_04g038100
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-X1
Protein Properties Length: 1090aa    MW: 117299 Da    PI: 8.0554
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G354301.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.32.2e-05356373118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG+H C+  CH+G C++C
  Sobic.004G354301.1.p 356 CGNHACKDMCHPGSCGEC 373
                           ****************** PP
2zf-NF-X118.15.8e-06414431118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG H+C+  CH G+CppC
  Sobic.004G354301.1.p 414 CGVHRCKVNCHDGECPPC 431
                           ****************** PP
3zf-NF-X118.44.6e-06509527119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+Cq lCH G CppC 
  Sobic.004G354301.1.p 509 CGQHSCQLLCHSGHCPPCL 527
                           ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.56E-7107184No hitNo description
PROSITE patternPS013590117177IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.934117178IPR001841Zinc finger, RING-type
SMARTSM004380.023237255IPR000967Zinc finger, NF-X1-type
PfamPF014228.1239254IPR000967Zinc finger, NF-X1-type
CDDcd060086.02E-10282330No hitNo description
PfamPF014220.084292309IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043292311IPR000967Zinc finger, NF-X1-type
CDDcd060085.59E-9346389No hitNo description
PfamPF014220.0031356373IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0013356375IPR000967Zinc finger, NF-X1-type
CDDcd060081.90E-12404452No hitNo description
PfamPF014226.9E-5414431IPR000967Zinc finger, NF-X1-type
SMARTSM004383.7E-4414433IPR000967Zinc finger, NF-X1-type
PfamPF014222.2470481IPR000967Zinc finger, NF-X1-type
SMARTSM00438230470482IPR000967Zinc finger, NF-X1-type
CDDcd060081.90E-8499551No hitNo description
PfamPF014221.4E-4509526IPR000967Zinc finger, NF-X1-type
SMARTSM004381.1E-4509528IPR000967Zinc finger, NF-X1-type
CDDcd060081.57E-4556604No hitNo description
PfamPF0142262566582IPR000967Zinc finger, NF-X1-type
SMARTSM004380.34566584IPR000967Zinc finger, NF-X1-type
PfamPF014220.1619634IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1619654IPR000967Zinc finger, NF-X1-type
PfamPF0142210656682IPR000967Zinc finger, NF-X1-type
SMARTSM004380.32663684IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1090 aa     Download sequence    Send to blast
MPPSSDRRRG GGPVATASRM WRPRYAAPAP DGAAPILPIP TPAPEARPRH RRPNHGNNGD  60
NRRPAPSQEQ NGDAGHHRHG APTERPAAAA RETRADGAVP QLVQEIQDKL ARGAVECMIC  120
YDMVRRSAPV WSCGSCFSIF HLPCIRKWVR SPASAADASP AAADPASASP SWRCPGCQFV  180
YATPARDLAY TCFCGRRRDP PNDHFLTPHS CGEPCSRPLE RAEPPGAKGE DADATRCPHV  240
CVLQCHPGPC PPCKAFAPDR PCPCGKQIIV RRCADRSTPV TCGRPCQQML TCRRHRCEKV  300
CHTGSCGDCD VLISARCFCG KKNEALLCGD MVVKGKLSEE DGLFSCSEVC GRTLACGNHA  360
CKDMCHPGSC GECELMPGKV TTCHCGKTRL QETRASCLDA IPTCDKICDK KLTCGVHRCK  420
VNCHDGECPP CLVRVEQKCR CGSSAQMVEC YKVSMEEFRC NKPCGCKKNC GRHRCSELCC  480
PLSRKFAQLE GGDWDPHLCQ ISCGKKLRCG QHSCQLLCHS GHCPPCLETI FTDLTCACGR  540
TSLPPPLPCG TPTPSCSHQC SVPQPCGHPA SHSCHFGDCP PCVVPVMREC IGGHVMLRNI  600
PCGSKDIRCN QPCGKNRQCG VHACNRPCHP PPCDQPPANG DASSSSGGKA SCGQVCGAAR  660
RECKHTCTAP CHPSSQCPDL RCEFAVTITC SCGRINATVP CGAGGASMGD NLFEVSIIQK  720
LPMPLQPVES NGRKVPLGQR KLSCDEECAK MEKKRVLAEA FDITPPNLDA LHFGENSSSS  780
DLVADLFRRE PKWVLAIEER CKFLVLGKVR GSSSSNLKLH VFCHMLKDKR DAISLIANRW  840
KLSVQVAGWE PKHFVIIHVT PKSKPPARIL GSKPGAPVTA AHPYFDPLVD MDPRMVVAML  900
DLPRDADVTA LVLRFGGECE LIWLNDKNAI AVFNDPTRAA TALRRLDYGS GYQGAVMFMP  960
SSAQASSSGN VWIGGQKDGG LAARSNPWKK PASAEPDMSS GDRTGVAGHA PAPGWRGANT  1020
TSRVMETPNR WNVLESDAAA SSVPGNEWRR AVPCTDASYS AIPNAGNAGP SVTKLQPDVD  1080
VDDWEEACE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.71040.0panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G354301.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454823.20.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1Z5RQJ90.0A0A1Z5RQJ9_SORBI; Uncharacterized protein
STRINGSb04g038100.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1