PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G354700.1.p

Common Name

Sb04g038140, SORBIDRAFT_04g038140

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

TCP

Protein Properties

Length: 244aa MW: 24484.5 Da PI: 10.7658

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G354700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.9	9e-39	32	120	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++s+s ++ Sobic.004G354700.1.p 32 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSTSSTSPHP 120 789*************************************************************9999988854444444443322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-33	38	125	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	38	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MTTRPDGSGS AAPADKQLVP VSNGNGNSGA LAVRKAPSKD RHSKVDGRGR RIRMPIICAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTSSPSSL RSTSSTSPHP 120 LSASPTAGLP HAAAPFILGK RVRGDGADAE PTVAAPAPGF WALPARADFG QLWSFAAAPE 180 MMVAAAAAAA AAPAMAGEAS AARVGNYLPV AQGNLNLLAS FSGGPAPTAA AATAGRAEEE 240 TAR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G354700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU972127	1e-118	EU972127.1 Zea mays clone 375636 hypothetical protein mRNA, complete cds.
GenBank	KJ727695	1e-118	KJ727695.1 Zea mays clone pUT5634 TCP transcription factor (TCP4) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454824.1	1e-171	transcription factor TCP7
Swissprot	Q9FMX2	2e-77	TCP7_ARATH; Transcription factor TCP7
TrEMBL	C5XWP0	1e-169	C5XWP0_SORBI; Uncharacterized protein
STRING	Sb04g038140.1	1e-170	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100
Representative plant	OGRP8514	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-45	TCP family protein

Link Out ? help Back to Top
Phytozome	Sobic.004G354700.1.p
Entrez Gene	8084453