PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G013600.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 228aa    MW: 25245.9 Da    PI: 8.7513
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G013600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY703.4e-2244105259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                           dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  Sobic.005G013600.5.p  44 DDGHQWRKYGEKKLSNSHFPRFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCS 105
                           8***************************99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-2333105IPR003657WRKY domain
SuperFamilySSF1182902.88E-2236106IPR003657WRKY domain
PROSITE profilePS5081116.06538107IPR003657WRKY domain
SMARTSM007746.7E-3343106IPR003657WRKY domain
PfamPF031061.2E-2444104IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MALDSVPPYP CDLGSSRAAA AARTQQRIRK DERTWTSDTY APYDDGHQWR KYGEKKLSNS  60
HFPRFYYRCT YKNDMKCPAT KQVQQKDTSD PPLFSVTYFN HHTCSTSSSA IGSARDITSQ  120
SSSKKAVSIC FSPHTASEQP SFLTSPAMPQ STIMHPYSAN QQSDRSAYAY QQLQWTGSVP  180
SHASNGPAKM EVDDSAQPSP SSSSTSALSR TLLPIGQSRC IEYFHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-1544104968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.55020.0pollen| root| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G013600.5.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0347841e-155BT034784.1 Zea mays full-length cDNA clone ZM_BFb0017P16 mRNA, complete cds.
GenBankEU9539001e-155EU953900.1 Zea mays clone 1448775 WRKY46 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317523.11e-168probable WRKY transcription factor 48
TrEMBLA0A1Z5RGK41e-167A0A1Z5RGK4_SORBI; Uncharacterized protein
STRINGSb05g001175.11e-131(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-20WRKY DNA-binding protein 55