PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G013600.6.p
Common NameSb05g001175, SORBIDRAFT_05g001175
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 170aa    MW: 18587.6 Da    PI: 8.7139
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G013600.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.58.1e-116472259
                          EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                  WRKY 22 rsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                          r YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  Sobic.005G013600.6.p  6 RFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCS 47
                          88******99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.6E-8248IPR003657WRKY domain
PfamPF031066.8E-13546IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-10547IPR003657WRKY domain
SuperFamilySSF1182903.66E-10548IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAHGRRFYYR CTYKNDMKCP ATKQVQQKDT SDPPLFSVTY FNHHTCSTSS SAIGSARDIT  60
SQSSSKKAVS ICFSPHTASE QPSFLTSPAM PQSTIMHPYS ANQQSDRSAY AYQQLQWTGS  120
VPSHASNGPA KMEVDDSAQP SPSSSSTSAL SRTLLPIGQS RCIEYFHFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.55020.0pollen| root| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G013600.6.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317523.11e-117probable WRKY transcription factor 48
TrEMBLA0A1Z5RG971e-121A0A1Z5RG97_SORBI; Uncharacterized protein
STRINGSb05g001175.11e-117(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.26e-10WRKY family protein