PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G013800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 272aa    MW: 30677.6 Da    PI: 6.2828
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G013800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY573.8e-18124187359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT....EEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk....vveitYegeHnhe 59 
                           Dg++WrKYGqK +  ++++rsYYrC+++   gCp++k v+++++d++    ++++ Y g+H ++
  Sobic.005G013800.1.p 124 DGCHWRKYGQKWISRAKHSRSYYRCAYSkeqGCPATKTVQQKENDGNgtvrLFNVNYYGQHICN 187
                           9*************************988889************9863333789*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-21107187IPR003657WRKY domain
SuperFamilySSF1182906.41E-19116187IPR003657WRKY domain
SMARTSM007745.2E-26122188IPR003657WRKY domain
PROSITE profilePS5081114.63124180IPR003657WRKY domain
PfamPF031061.3E-20124186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMNILESSNL GGYKEVINEV EHQRALMMNL HDLVLPILDP CSGQAKLIQQ LFEEVFSSSG  60
KIISSLELGD NSEKQAILIK HKGKGGKDNV ENHILEENNK DRGNKRRKNA NHISSVVTQT  120
PYFDGCHWRK YGQKWISRAK HSRSYYRCAY SKEQGCPATK TVQQKENDGN GTVRLFNVNY  180
YGQHICNSDG IVHPHVVGAT QDSMPIVSQN QNSSSVFVNT DVHGVQDEIF ESLFMVPDMP  240
EYLTEFVDVE MARAFEITPM NSPMIPEDIW A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G013800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317522.10.0probable WRKY transcription factor 67
TrEMBLC5Y3H60.0C5Y3H6_SORBI; Uncharacterized protein
STRINGSb05g001180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Representative plantOGRP1240236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.14e-16WRKY DNA-binding protein 62