PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G013800.2.p
Common NameSb05g001180, SORBIDRAFT_05g001180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 268aa    MW: 30107.9 Da    PI: 6.1224
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G013800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.93.5e-12124183359
                           -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT....EEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk....vveitYegeHnhe 59 
                           Dg++WrKYGqK +  ++++r  Y    +gCp++k v+++++d++    ++++ Y g+H ++
  Sobic.005G013800.2.p 124 DGCHWRKYGQKWISRAKHSRCAYS-KEQGCPATKTVQQKENDGNgtvrLFNVNYYGQHICN 183
                           9******************98774.456*************9863333789*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-15107183IPR003657WRKY domain
SuperFamilySSF1182902.22E-13116183IPR003657WRKY domain
SMARTSM007742.4E-19122184IPR003657WRKY domain
PfamPF031062.2E-15124182IPR003657WRKY domain
PROSITE profilePS508119.385124176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MMNILESSNL GGYKEVINEV EHQRALMMNL HDLVLPILDP CSGQAKLIQQ LFEEVFSSSG  60
KIISSLELGD NSEKQAILIK HKGKGGKDNV ENHILEENNK DRGNKRRKNA NHISSVVTQT  120
PYFDGCHWRK YGQKWISRAK HSRCAYSKEQ GCPATKTVQQ KENDGNGTVR LFNVNYYGQH  180
ICNSDGIVHP HVVGATQDSM PIVSQNQNSS SVFVNTDVHG VQDEIFESLF MVPDMPEYLT  240
EFVDVEMARA FEITPMNSPM IPEDIWA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G013800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317522.10.0probable WRKY transcription factor 67
TrEMBLA0A1Z5RG530.0A0A1Z5RG53_SORBI; Uncharacterized protein
STRINGSb05g001180.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.12e-11WRKY DNA-binding protein 62