PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G014000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 290aa    MW: 33044.5 Da    PI: 6.7443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G014000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY573.8e-18138202359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 
                           Dg +WrKYGqK++++++++rsYYrCt++   gC+++k v+++++      + + +++Y g+H+++
  Sobic.005G014000.1.p 138 DGRQWRKYGQKHINNTKHSRSYYRCTYRqeqGCKATKTVQQQDDssgadHTLMYTVVYYGQHTCK 202
                           999************************98899********9874222213457899*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-20131202IPR003657WRKY domain
SuperFamilySSF1182905.23E-20132202IPR003657WRKY domain
SMARTSM007742.3E-29136203IPR003657WRKY domain
PROSITE profilePS5081114.297138178IPR003657WRKY domain
PfamPF031061.5E-22138202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKHQQYNSRC LAESSASDHR SAVKEIARGQ SLVTQLRAIV LPVLQADERS ELVAQMFQNI  60
LDCSSKAMAE LQMHQSRSTR RPHDDDDVLV DDKKRVKKIS SVDCKNEEGV TAAKPRHQHK  120
RRRFDDSVSL ETPVPHYDGR QWRKYGQKHI NNTKHSRSYY RCTYRQEQGC KATKTVQQQD  180
DSSGADHTLM YTVVYYGQHT CKDNDGANSS PDDSEINTRS SSDSHSSISS TCTDPCDHQN  240
QTSLHEDKPF VNKSEELVTK DMYEPFEMTV FAPLDLDSWE LDALLRFGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-141382021069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G014000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284208e-62KJ728420.1 Zea mays clone pUT6725 WRKY transcription factor (WRKY9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317456.10.0probable WRKY transcription factor 62
TrEMBLC5Y3H80.0C5Y3H8_SORBI; Uncharacterized protein
STRINGSb05g001200.11e-166(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Representative plantOGRP1147447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-17WRKY DNA-binding protein 54