PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G014200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 273aa    MW: 30805.8 Da    PI: 6.4164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G014200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.27e-18142185243
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversae 43 
                            Dg++WrKYGqK+++g ++prsYYrCt++  +C ++k ++++++
  Sobic.005G014200.1.p 142 YDGHQWRKYGQKNINGRQHPRSYYRCTYReqNCFATKTIQQQEQ 185
                           59**************************999********99874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-21126213IPR003657WRKY domain
SuperFamilySSF1182902.62E-18135213IPR003657WRKY domain
SMARTSM007741.7E-24141214IPR003657WRKY domain
PfamPF031061.3E-22143213IPR003657WRKY domain
PROSITE profilePS5081115.353143182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDIKSSLIML PPCSHGWEMM ETMRRQQELV MQLRAFVLPL LPGVIVDGTS AAEIAVQLFD  60
DVIGCNIGVV STLEGCLVST GARGGSSGEP VDNKSLVRKN SCHVTEGETT DEQARHRSVV  120
GQKRRRKNDK RSRSLVTHVP HYDGHQWRKY GQKNINGRQH PRSYYRCTYR EQNCFATKTI  180
QQQEQIDSIR RSATPGEEIA KYTVVYYGEH TCKDHSISIV QLPQLVSCMD LQNMEIAQTS  240
SDVQDPEADL DLPALLEVFD NSVIDWEDIW KI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G014200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450153.20.0probable WRKY transcription factor 2
TrEMBLC5Y3I20.0C5Y3I2_SORBI; Uncharacterized protein
STRINGSb05g001220.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15881913
Representative plantOGRP1477034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-15WRKY family protein