PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G014800.1.p
Common NameSb05g001280, SORBIDRAFT_05g001280
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 241aa    MW: 26062.9 Da    PI: 6.518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G014800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-1985134355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr+++ +g+++AeIrdp   g   kr +lg+f+taeeAa+ ++aa+++++g
  Sobic.005G014800.1.p  85 FRGVRRRP-WGKYAAEIRDP---GlAGKRRWLGTFDTAEEAAAVYDAAALRIRG 134
                           8*******.**********9...6556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3484148IPR001471AP2/ERF domain
PROSITE profilePS5103223.61784142IPR001471AP2/ERF domain
CDDcd000181.06E-1685141No hitNo description
Gene3DG3DSA:3.30.730.102.1E-2985143IPR001471AP2/ERF domain
PRINTSPR003673.2E-98596IPR001471AP2/ERF domain
PfamPF008471.6E-1085134IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2285143IPR016177DNA-binding domain
PRINTSPR003673.2E-9108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDPLHPRDLA MDDTRQHQHL RPRHAAGGRM VRVRFADSEA TDSDSSDECH RQRHRLLHQI  60
GQPLPSSPAP APQRNRLSRT GDRPFRGVRR RPWGKYAAEI RDPGLAGKRR WLGTFDTAEE  120
AAAVYDAAAL RIRGRRAVTN FPSSPAAVAP APAPALAAPR SNPSPAPEAE TSSASTVVDA  180
GTGGDDEVTG VPPTPPWFGE GGPLELLDFG LPPAATKRGQ WEEEEFGDLG DLDHLFDLPF  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2185142663ATERF1
3gcc_A7e-2185142663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G014800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450156.11e-171ethylene-responsive transcription factor ERF112
TrEMBLA0A1Z5RHA01e-170A0A1Z5RHA0_SORBI; Uncharacterized protein
STRINGSb05g001280.11e-170(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP1976322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-16ERF family protein