PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G041100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 428aa    MW: 44735.9 Da    PI: 7.5669
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G041100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39e-10137199163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           eke kr rr   NRe+Ar   +R++a  +eL++kv+ L+++N+ +kke ++  +e+ +lk  +
  Sobic.005G041100.1.p 137 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSSQNENMKKEKDMVMQEYLSLKEAN 199
                           89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001703.2E-8137200IPR004827Basic-leucine zipper domain
SMARTSM003381.3E-11137201IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.048139202IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.58E-6141197No hitNo description
Gene3DG3DSA:1.20.5.1704.5E-5141197No hitNo description
CDDcd147021.07E-13142192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSDDSDGQRQ CRRGVTVDVD VELDAAMALA DMAGVGPAGE QQQQPPPPPV RRAPPPPGPA  60
NPTQDDEEEL ASTRLSLELG KVGIQASPCS SSSSAGGGGQ HPHHQQAAYH QQQQPAPATA  120
TATGYGPRPR HALTEAEKEA KRLRRVLANR ESARQTILRR QAIRDELARK VADLSSQNEN  180
MKKEKDMVMQ EYLSLKEANK QLKEQVATRT AKKAAAAVTA AMPAQQQQQA ESMAAVASTA  240
SPPATPPRPG FLYTAAAPAP VVPVPYVWGS WPPGATAAGY EHRGSPPPLC LQPCAWYYPV  300
VQADPRGSPS SAYAQPQPPQ QAAAFQDPRG AAAEPVGSGG SPAGGGATAE EDTDDDPCSL  360
TLGLDVVDKR MSAPVSIFPA GPGGGGGGAL SDRDKAATAA EARKRRKELT KLKHMHAATA  420
RPGGEQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1402407RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G041100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1B6PQ170.0A0A1B6PQ17_SORBI; Uncharacterized protein
STRINGSb05g003420.11e-155(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Representative plantOGRP45691318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.11e-16bZIP family protein