PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G041400.2.p
Common NameSb05g003450, SORBIDRAFT_05g003450
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 275aa    MW: 30780.1 Da    PI: 7.2611
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G041400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.47.9e-3036136195
                           EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k ltpsdv+k++rlv+pk++ae++    g + e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F+++
  Sobic.005G041400.2.p  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDVVHFERM 124
                           99***************************9666668889************************************************77 PP

                           SS..SEE..EEE CS
                    B3  86 gr..sefelvvk 95 
                           ++  ++ +l+++
  Sobic.005G041400.2.p 125 RSfgMGDRLFIS 136
                           544455555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-4030142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-2933137IPR015300DNA-binding pseudobarrel domain
CDDcd100176.31E-2834126No hitNo description
SMARTSM010194.1E-2236141IPR003340B3 DNA binding domain
PfamPF023624.2E-2736135IPR003340B3 DNA binding domain
PROSITE profilePS5086313.63436140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAMNHLSQEH PQAWPWGVAM YTNLHYQHHY EKEHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLSGDSGE KGLILSFEDE AGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KQLDAGDVVH  120
FERMRSFGMG DRLFISYRRH GESATVAAAP PPPPPPPAVR VVAPAQSTGG GEQQPWSPMC  180
YSTSGSYPTS PANSHAYRHS VDHDHSNMQH AGESQSDRDN RSCSAASAPS SRQLRLFGVN  240
LDCGPGPELE PETPTAMYGY MHQSPYTSNN WSSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-51311403113B3 domain-containing transcription factor NGA1
5os9_B8e-51311403113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.109460.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G041400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450302.20.0B3 domain-containing protein Os11g0156000
SwissprotQ53QI01e-123Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLC5Y5150.0C5Y515_SORBI; Uncharacterized protein
STRINGSb05g003450.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-54B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]