PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G045200.1.p
Common NameSb05g003750, SORBIDRAFT_05g003750
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 691aa    MW: 71661.2 Da    PI: 6.6325
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G045200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82e-093854221954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Sobic.005G045200.1.p 385 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 422
                           664459******************************88 PP
2BELL116.51.3e-37245316172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           erqelq+kk+kL+++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia+q+
  Sobic.005G045200.1.p 245 ERQELQMKKSKLINMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIASQV 316
                           79********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-60168314IPR006563POX domain
PfamPF075263.3E-49173313IPR006563POX domain
PROSITE profilePS5007111.969363426IPR001356Homeobox domain
CDDcd000863.84E-13366427No hitNo description
SMARTSM003891.2E-9366430IPR001356Homeobox domain
SuperFamilySSF466894.15E-17368432IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-29369432IPR009057Homeodomain-like
PfamPF059202.7E-18383422IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQASTDGL QTLYLMNPSY AGYADDGGAS TAPGATNMML LNSAVTTMTP  60
ASFAHHHQQQ QSPSSAAHHQ QQQHFVGIPL QAPPSGYNLW TPATVAADMS MSSPTQAQTP  120
GGAAAGGVSA VLSLSSREAA PPPVTVAAVA GPGCTDEAGK YHLGVSATSQ GQMVMSSKYL  180
KAAQELLDEV VSVSKGVEDA NKTTTKSLAA VKKKEDSEGV SGGGTEDGSG AKSGGSGAAE  240
MSTAERQELQ MKKSKLINML DEVEQRYRQY HGQMQAVSSS FEAAAGAGSA RTYTALALRT  300
ISRQFRCLRD AIASQVRAAS RALGEDADAA VAAGGRTVGS RLRYIDHQLR QQRALQQLGM  360
MQGGAWRPQR GLPERSVSIL RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS QVSNWFINAR  420
VRLWKPMVEE MYLEETKDQD GGGNDEGKSG GGGSKSGDTV DGVTPRADAM SSKSAVVRVG  480
GGGGAAESAS TNKGIHGSSL LELGGGGDHQ QSHAGFYDDD EDDGDDAMGR RLKKARGDEP  540
PAPAFHHVHD MAALHAQAAA AARQQHEEVS HRELLMKFME SGGGGGAGAR DHHHHHDGGG  600
YSLFAPGPYG QFAAEPAAFA FAGNGGVSLT LGLPHGAAGG SAAEQTASFL MGSTTAGADS  660
GSHGAGAGGY DMNMQSTKSF AAQLMRDFVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-17372430563Homeobox protein Meis2
4xrm_B3e-17372430563Homeobox protein Meis2
5bng_A2e-17372430159Homeobox protein Meis2
5bng_B2e-17372430159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.133750.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G045200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860920.0BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450321.10.0BEL1-like homeodomain protein 1
RefseqXP_021317176.10.0BEL1-like homeodomain protein 1
RefseqXP_021317177.10.0BEL1-like homeodomain protein 1
RefseqXP_021317178.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-106BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLC5Y5500.0C5Y550_SORBI; Uncharacterized protein
STRINGSb05g003750.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.39e-73BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]