PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G056300.1.p
Common NameSb05g004580, SORBIDRAFT_05g004580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 284aa    MW: 31291.6 Da    PI: 8.6646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G056300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.43.2e-37151431128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           l+pG++F+Pt+ee+v++yL++++ +++l+  ++i +vdi +++PwdL     +++ e yfF++r k+ ++gkr nra+ +g W+a+gkd
  Sobic.005G056300.1.p  15 LAPGYKFKPTEEEIVMRYLRPRAVNEPLPS-TFIVDVDIRSCNPWDLV---PEGSVEKYFFCQRVKRWPHGKRYNRAAGDGHWRASGKD 99 
                           579************************999.89**************4...3566799******************************* PP

                   NAM  90 kevlsk...kgel...vglkktLvfykgrapkgektdWvmheyrl 128
                            +++s+   +      vglkktLvfy g+a  ge+t+Wvm+ey+l
  Sobic.005G056300.1.p 100 MPIFSNiinG-GMplmVGLKKTLVFYLGKAAVGENTEWVMQEYSL 143
                           *****87752.22466***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-4111153IPR003441NAC domain
PROSITE profilePS5100541.09415213IPR003441NAC domain
PfamPF023653.6E-2017143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MNFSKPTACE AYMELAPGYK FKPTEEEIVM RYLRPRAVNE PLPSTFIVDV DIRSCNPWDL  60
VPEGSVEKYF FCQRVKRWPH GKRYNRAAGD GHWRASGKDM PIFSNIINGG MPLMVGLKKT  120
LVFYLGKAAV GENTEWVMQE YSLVQAGLTP YPVISPNGTN NLGEQSRDLV AITKEKVNLS  180
EALSNTTTAS VPKVVPVMIS PDDSWVVCCI YKKKKKRAPR AIAQRYNIAD GGQVHFFNFL  240
GQGNSEGNSS SGSLTDLPIE KAKDNNEGTS GTNDKADTNE AGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-3111431140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G056300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450381.10.0NAC transcription factor NAM-B1
TrEMBLC5Y5Q60.0C5Y5Q6_SORBI; Uncharacterized protein
STRINGSb05g004580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Representative plantOGRP1240326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-36Arabidopsis NAC domain containing protein 87