PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G059900.1.p
Common NameSb05g004870, SORBIDRAFT_05g004870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 242aa    MW: 26352.5 Da    PI: 6.3119
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G059900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.41e-17141383128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           p  +F+Ptde++v +yL +++ g +++ e+++ ++d +++ Pw+L  ++ +a++++ +fF++ +  +++  rk    +  + +  g   
  Sobic.005G059900.1.p  14 PANKFDPTDEDIVAQYLLPRAVGLPNPYEHAVIDADPCSCPPWELLrRHGHAGSDQAFFFVPPRVMSRNAGRKAEDKALVIVRGDGDGD 102
                           6779************************999**************734555567799*****999999988887765555666666655 PP

                   NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +  + + +++  +  L ++++   + +++ Wvmhey++
  Sobic.005G059900.1.p 103 ARGAPELTVMFRRYNLSYHRKG--DRRSSGWVMHEYHV 138
                           55555778899999*****544..4458********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-2411153IPR003441NAC domain
PROSITE profilePS5100520.40712155IPR003441NAC domain
PfamPF023655.9E-1215138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEARRFGFGA SMSPANKFDP TDEDIVAQYL LPRAVGLPNP YEHAVIDADP CSCPPWELLR  60
RHGHAGSDQA FFFVPPRVMS RNAGRKAEDK ALVIVRGDGD GDARGAPELT VMFRRYNLSY  120
HRKGDRRSSG WVMHEYHVVH PELRPGAVVA RIKITEKAKK MGKRPREQQL QEEDAVIARA  180
GTAAALVPGL DQPGPSNYFG SESDYGHAAG NAVVASVVGE GVGDNFLQLD GNDDNFLQDE  240
G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G059900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449098.11e-173NAC domain-containing protein 41
TrEMBLA0A1Z5RI131e-177A0A1Z5RI13_SORBI; Uncharacterized protein
STRINGSb05g004870.11e-173(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Representative plantOGRP9888212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.13e-08NAC domain containing protein 45