PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G060000.1.p
Common NameSb05g004880, SORBIDRAFT_05g004880
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 233aa    MW: 24907.7 Da    PI: 6.5142
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G060000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.56.5e-20141632128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra............ 77 
                           pp ++F+Ptd ++vv+yL +++ g +++ e+++ + d +++ Pw+L  ++ +a++++ +fF + +  +   kr+ r+            
  Sobic.005G060000.1.p  14 PPAYKFDPTDTDIVVHYLLPRALGVPNPYEHAVIDGDPCSCPPWELMrRNGHADSDHAFFFPPPRDGE---KRPVRVvsspapapgedd 99 
                           899*************************99999999**********8333334444667777766544...577775577889999888 PP

                   NAM  78 ..tksgyWkatgkdke.vlsk.........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                              ++g W a+ ++++ v+           +        +  +  L +y+g++p+   + Wvmhey++
  Sobic.005G060000.1.p 100 gaRARGKWDAQKSTESsVVLVrgggpggigG--GaevlvKYKRCNLSYYHGKEPS--TSGWVMHEYQI 163
                           87668****9887554144435666666652..045553445568****999999..89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-255179IPR003441NAC domain
PROSITE profilePS5100521.75713180IPR003441NAC domain
PfamPF023651.3E-1314163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEAWRFGFDP SLFPPAYKFD PTDTDIVVHY LLPRALGVPN PYEHAVIDGD PCSCPPWELM  60
RRNGHADSDH AFFFPPPRDG EKRPVRVVSS PAPAPGEDDG ARARGKWDAQ KSTESSVVLV  120
RGGGPGGIGG GAEVLVKYKR CNLSYYHGKE PSTSGWVMHE YQITVPPRLS GTVLSRVKVT  180
DRGKQRLRKA AAGGGSQQVV AVPDPDEPGP SNYDDGGGGD GNALGSSGGE RAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G060000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449099.11e-169NAC transcription factor NAM-2
TrEMBLA0A1B6PQE41e-168A0A1B6PQE4_SORBI; Uncharacterized protein (Fragment)
STRINGSb05g004880.11e-169(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Representative plantOGRP1194335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.16e-08NAC domain containing protein 25