PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.005G089101.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NF-YC

Protein Properties

Length: 172aa MW: 18623.6 Da PI: 4.2612

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G089101.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	77.1	2.4e-24	32	131	3	99
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 fw ++ ie+ +f+nh+lP+ i i++a+ m s+++P ++k celfi el++r+w+ a + r t+ sdi++a+++t+ Sobic.005G089101.1.p 32 DDFWRRRqedIENLMNFNNHNLPIENIEEIIRANLGSVMTSSDTPPYVTKLCELFIQELAIRAWMCASSHGRYTILESDITEAINSTKP 120 569976556699*************************************************************************** PP NF-YC 89 fdflvdivprd 99 + fl + p d Sobic.005G089101.1.p 121 YSFLNGVLPSD 131 **9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.04E-17	29	124	IPR009072	Histone-fold
Pfam	PF00808	7.7E-9	52	115	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.1E-17	53	129	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MSNGSEDRSE HPQELNGSSP TPLMTPQEQE IDDFWRRRQE DIENLMNFNN HNLPIENIEE 60 IIRANLGSVM TSSDTPPYVT KLCELFIQEL AIRAWMCASS HGRYTILESD ITEAINSTKP 120 YSFLNGVLPS DGSSPLLSGN GSSPLGSSGS SPCSSSTTNL APLSSTMALG R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-15	40	129	5	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.005G089101.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450581.1	5e-94	uncharacterized protein LOC8071541
TrEMBL	A0A1Z5RI22	1e-121	A0A1Z5RI22_SORBI; Uncharacterized protein
STRING	Sb05g007280.1	2e-93	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13968	15	28
Representative plant	OGRP16973	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	6e-20	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Sobic.005G089101.1.p