PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G104800.1.p
Common NameSb05g009460, SORBIDRAFT_05g009460
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 277aa    MW: 29659 Da    PI: 10.2803
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G104800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-172065147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          rg W + Ede+l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Sobic.005G104800.1.p 20 RGHWRPGEDEKLKQLVEKYGPQNWNSIAEKLD-GRSGKSCRLRWFNQ 65
                          899*****************************.***********996 PP
2Myb_DNA-binding62.58.6e-2073116247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T+eE+e+l++a++ +G++ W++Iar+++ gRt++ +k++w+ +
  Sobic.005G104800.1.p  73 RPFTEEEEERLLNAHRAHGNK-WALIARHFP-GRTDNAVKNHWHVV 116
                           69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.7721566IPR017930Myb domain
SuperFamilySSF466891.39E-3018113IPR009057Homeodomain-like
SMARTSM007173.0E-141968IPR001005SANT/Myb domain
PfamPF002499.9E-172065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-272173IPR009057Homeodomain-like
CDDcd001672.29E-142364No hitNo description
PROSITE profilePS5129428.18867121IPR017930Myb domain
SMARTSM007173.6E-1771119IPR001005SANT/Myb domain
PfamPF002497.0E-1772115IPR001005SANT/Myb domain
CDDcd001673.43E-1474117No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2274119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPSSSTTNTS DGAKSSSCPR GHWRPGEDEK LKQLVEKYGP QNWNSIAEKL DGRSGKSCRL  60
RWFNQLDPRI NKRPFTEEEE ERLLNAHRAH GNKWALIARH FPGRTDNAVK NHWHVVMARR  120
SRERSRLLAR AASSAASSPS AGGYLFGAGT PATSSLCFGF SKLGGGGSGG GLFSSPAASP  180
PTSLFKSFGT ATGSKGFLGA SFEASGRYNY SGKQLTAPLS ITFASPSEAL GMDIGHHGRH  240
EHHQKDYHAA SGDSADEPLK KKDVPFIDFL GVGVSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-31201204104C-Myb DNA-Binding Domain
1msf_C3e-31201204104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G104800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656750.0BT065675.1 Zea mays full-length cDNA clone ZM_BFc0014F11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450672.10.0transcription factor MYB3R-3
TrEMBLC5Y1Y90.0C5Y1Y9_SORBI; Uncharacterized protein
STRINGSb05g009460.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-60myb domain protein 52