PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G162400.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 131aa    MW: 14686.8 Da    PI: 10.202
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G162400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.11.2e-1382116133
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                           C+nC+ ++  Tp++Rrgp g k  CnaCGl ++ +
  Sobic.005G162400.2.p  82 CANCRESSevTPQMRRGPTGAKNFCNACGLAWATY 116
                           ********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-676129IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-779116No hitNo description
Gene3DG3DSA:3.30.50.101.1E-1181115IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.34E-881116No hitNo description
PfamPF003201.7E-1182116IPR000679Zinc finger, GATA-type
PROSITE patternPS00344082109IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MDKKDFNLNI WHQVPPIVVP QNFDRATAMS RYLKKRKSTM KADYSVRREI ALRITRRGGK  60
FAPSEKNSEN SVGTEAAELQ FCANCRESSE VTPQMRRGPT GAKNFCNACG LAWATYVSAP  120
ISHSFIYHSL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G162400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450996.23e-72GATA transcription factor 18
TrEMBLA0A1Z5RJ013e-94A0A1Z5RJ01_SORBI; Uncharacterized protein
STRINGSb05g022380.18e-71(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Representative plantOGRP1788522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.38e-18GATA-type zinc finger protein with TIFY domain