PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.005G177800.1.p

Common Name

Sb05g023730, SORBIDRAFT_05g023730

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 278aa MW: 29745.8 Da PI: 5.9084

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G177800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.1e-05	41	90	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ + erE+ Rd++N+ f eL ++l + + Ka++L A + +++L Sobic.005G177800.1.p 41 KKTHKAEREKLKRDQLNDLFVELGSMLDLD----RQNTGKATVLGDAARVLRDL 90 678899********************9886....56677888888777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-11	37	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-8	38	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.75E-4	40	90	No hit	No description
PROSITE profile	PS50888	10.988	40	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0032	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MVADTESADS LPGSSNAASE TPAHGLASKS IHQKSQENPS KKTHKAEREK LKRDQLNDLF 60 VELGSMLDLD RQNTGKATVL GDAARVLRDL ITQVESLRKE QSALVSERQY VSSEKNELEE 120 ENNSLKSQIS ELQNELCTRL RNSSLNQNSL GMSLPVANTV GPDLATHPMP QQIWSNIPNL 180 SSVSMAHPTN AATLLHSRDH SADAGQGYAP QPRELQLFPG ASSSPERGCS GLGSDQPASS 240 SLTDSLPGQL CLSLPQSSQE GSSSGVVPRS RKEQRNG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.005G177800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039027	1e-143	BT039027.1 Zea mays full-length cDNA clone ZM_BFb0351N03 mRNA, complete cds.
GenBank	BT088171	1e-143	BT088171.1 Zea mays full-length cDNA clone ZM_BFc0043H09 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317140.1	0.0	transcription factor bHLH11 isoform X1
TrEMBL	A0A1B6PT73	0.0	A0A1B6PT73_SORBI; Uncharacterized protein
STRING	Sb05g023730.1	1e-176	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12959	21	24
Representative plant	OGRP14679	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	3e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.005G177800.1.p
Entrez Gene	8066689