PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.005G177800.5.p

Common Name

Sb05g023730, SORBIDRAFT_05g023730

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 246aa MW: 26713.6 Da PI: 6.1644

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G177800.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5e-05	37	86	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ + erE+ Rd++N+ f eL ++l + + Ka++L A + +++L Sobic.005G177800.5.p 37 KKTHKAEREKLKRDQLNDLFVELGSMLDLD----RQNTGKATVLGDAARVLRDL 86 678899********************9886....56677888888877777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-11	33	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-9	33	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00103	36	86	No hit	No description
PROSITE profile	PS50888	10.988	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0032	42	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MVADTESADS LPGSSNAASE TPAHGSIHQK SQENPSKKTH KAEREKLKRD QLNDLFVELG 60 SMLDLDRQNT GKATVLGDAA RVLRDLITQV ESLRKEQSAL VSERQYVSSE KNELEEENNS 120 LKSQISELQN ELCTRLRNSS LNQNSLGMSL PVANTVGPDL ATHPMPQQIW SNIPNLSSVS 180 MAHPTNAATL LHSRDHSADA GQGYAPQPRE LQLFPGQLCL SLPQSSQEGS SSGVVPRSRK 240 EQRNG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.005G177800.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039027	1e-168	BT039027.1 Zea mays full-length cDNA clone ZM_BFb0351N03 mRNA, complete cds.
GenBank	BT088171	1e-168	BT088171.1 Zea mays full-length cDNA clone ZM_BFc0043H09 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451069.1	1e-152	transcription factor bHLH11 isoform X2
Refseq	XP_021317141.1	1e-152	transcription factor bHLH11 isoform X2
TrEMBL	A0A1Z5RJ78	1e-178	A0A1Z5RJ78_SORBI; Uncharacterized protein
STRING	Sb05g023730.1	1e-152	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.005G177800.5.p
Entrez Gene	8066689