PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G178400.2.p
Common NameSb05g023765, SORBIDRAFT_05g023765
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 135aa    MW: 13862.5 Da    PI: 7.5219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G178400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.21.9e-0542822154
                          HHHHCTSCC.C........TTS-.STCHHHHHHHHHHHHHH CS
                   HLH 21 eeLrellPk.as.....kapskK.lsKaeiLekAveYIksL 54
                          ++Lr llP+ a      ka++    s a +L++A+ YI+ L
  Sobic.005G178400.2.p 42 SRLRALLPPeAAaanngKAKASSsSSRARVLREACVYIRRL 82
                          79*******6669**9955555559**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-44196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSSSSSSRRR RRSRLSSPAA GGAAAPVQEQ VVVAAADDEL VSRLRALLPP EAAAANNGKA  60
KASSSSSRAR VLREACVYIR RLHAELDAAA EHLARLLDDD YPSAAAAAAV VVVDGANVNG  120
AGADDDELIR SLLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G178400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449812.22e-85transcription factor ILI2
TrEMBLA0A1Z5RJF96e-84A0A1Z5RJF9_SORBI; Uncharacterized protein
STRINGSb05g023765.11e-84(Sorghum bicolor)