PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G179700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23590.1 Da    PI: 9.3999
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G179700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.32.3e-141150342
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          i+n+  r  t+ +R +g+ KKA+EL +LC+++ +v+++++
  Sobic.005G179700.1.p 11 ISNNATRRATYKRRSQGLEKKASELTTLCGIKLCVVVYGE 50
                          99************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.035150IPR002100Transcription factor, MADS-box
CDDcd002661.91E-22262No hitNo description
PRINTSPR004047.1E-6323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-19392IPR002100Transcription factor, MADS-box
PfamPF003199.2E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MARKKVNLQW ISNNATRRAT YKRRSQGLEK KASELTTLCG IKLCVVVYGE GEAQPKVWPS  60
DEEAKDLLMK FNNMVDVSSL KKTKNQEDFL HSRSLKLHEQ VTKLELENRE RETLDLLHDS  120
MYGERPSLVG TDKDELLSLR DVVEMKMRKI KARLQQLVGQ GVLPQPLPQV MLPVSSSLQT  180
QASSYTSNEV QRMSVPEEHR PLQQDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G179700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451084.21e-150agamous-like MADS-box protein AGL80
TrEMBLC5Y5W71e-149C5Y5W7_SORBI; Uncharacterized protein
STRINGSb05g023895.11e-130(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-25M-type_MADS family protein