PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G180200.1.p
Common NameSb05g023915, SORBIDRAFT_05g023915
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 186aa    MW: 20935.3 Da    PI: 9.2624
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G180200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.41.4e-111150342
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          i+n+  r  t+ +  + + KKA+EL +LC+++ +v+++++
  Sobic.005G180200.1.p 11 ISNDATRRATYKRCSKSLEKKASELTTLCGIKLCVVVYGQ 50
                          99************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.6E-9160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.587150IPR002100Transcription factor, MADS-box
CDDcd002662.78E-18462No hitNo description
SuperFamilySSF554553.14E-16492IPR002100Transcription factor, MADS-box
PfamPF003191.2E-111150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAHKKVNLQW ISNDATRRAT YKRCSKSLEK KASELTTLCG IKLCVVVYGQ GEAQPKVWPS  60
NEEAKDLLMK FNRRLDVSCL KKTKNQEEFL QSRSLKLHEQ VSKLDLENRE HETLDLLHDS  120
MVGGRPGLVG SNKGELLSLR DMVDMKMRKI EARLQQLAVG EEVLPQPLPQ DSYNLGACSM  180
LPSAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G180200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317822.12e-99agamous-like MADS-box protein AGL80
TrEMBLA0A1B6PT921e-133A0A1B6PT92_SORBI; Uncharacterized protein
STRINGSb05g023915.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-21M-type_MADS family protein