PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G189100.1.p
Common NameSb05g024630, SORBIDRAFT_05g024630
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family E2F/DP
Protein Properties Length: 335aa    MW: 36505 Da    PI: 6.7886
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G189100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.82.5e-2577164271
               E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneir 68 
                           ++ +Lr+++++   + ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+
  Sobic.005G189100.1.p  77 NGGGLRQFSMR---VREKVESkGRTTYNEVADELVAEfldpktnidtldhdnpsaqqyDEKNIRRRVYDALNVLKAMDIISK-DKKEIQ 161
                           678********...99999999************************************************************.****** PP

               E2F_TDP  69 wkg 71 
                           wkg
  Sobic.005G189100.1.p 162 WKG 164
                           *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.3E-1036334IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.1E-4272170IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-3376164IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-1879165IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.5E-2379164IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144588.40E-30169272IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.89E-31171283No hitNo description
SMARTSM011381.0E-69171332IPR014889Transcription factor DP, C-terminal
PfamPF087819.9E-33172300IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPTTGGGGGS SASDKGGSAS SSSASLPTPP PCESTVAWPL PLNGLDIPGD DTPSSQPAAT  60
ASKKKRRGAR AVGPDKNGGG LRQFSMRVRE KVESKGRTTY NEVADELVAE FLDPKTNIDT  120
LDHDNPSAQQ YDEKNIRRRV YDALNVLKAM DIISKDKKEI QWKGLPKTSM NDIEELKKEV  180
TGLKDRIKKK NEYLQELEEQ YVCLQNLGRR NKQLYELGVA PSRTLALPFI LLQTRHGANV  240
QVELSEDEQT VHVDFDSAPY ELRDESFVMK AMGLCGKQEN DCTQAPVANG GECSSTPNNH  300
WDQTPQPPSG PRGVRVPNAP PIPGILKGPV KHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3070169193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.60380.0pollen
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G189100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449866.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-102DPB_ARATH; Transcription factor-like protein DPB
TrEMBLC5Y6G10.0C5Y6G1_SORBI; Uncharacterized protein
STRINGSb05g024630.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-104Transcription factor DP