PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G195400.1.p
Common NameSb05g025230, SORBIDRAFT_05g025230
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 243aa    MW: 27078.3 Da    PI: 4.9925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G195400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-111672071055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +rRR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Sobic.005G195400.1.p 167 KRRRERINERLRTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 207
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-15154222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14155220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.51157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-11163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.86E-12166211No hitNo description
PfamPF000101.1E-8167207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEANSASIWS EESEMIAHLQ SMFWSSSNAD SCLSSPNSST SSCVENEPFD KEQCLDTGAV  60
WCFDHQSQVF APITNEVTGI KRVCLMDENK KSKNAKKLRT IALVSRTSSN APADEINTEL  120
VSQSCSWSCS SEDDSIGVCE ESVVLKQSTS SRGRSRSSKD LQSLYAKRRR ERINERLRTL  180
QQLIPNGTKV DMSTMLEEAV QYVKFLQLQI KLLSSEDTWM YAPLAYNHMS MDVSQNAAVN  240
QS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G195400.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658901e-84BT065890.2 Zea mays full-length cDNA clone ZM_BFc0182I15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449894.11e-179transcription factor bHLH54
TrEMBLA0A1Z5RJE91e-178A0A1Z5RJE9_SORBI; Uncharacterized protein
STRINGSb05g025230.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.12e-29bHLH family protein