PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G217200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 293aa    MW: 32278.2 Da    PI: 7.7995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G217200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-175093146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          rg +T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Sobic.005G217200.2.p 50 RGDFTADEQLLILDLHSRWGNR-WSKIAAHLP-GRTDNEIKNYWRT 93
                          899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.891544IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.0E-62643IPR009057Homeodomain-like
SuperFamilySSF466899.19E-2230105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-244498IPR009057Homeodomain-like
PROSITE profilePS5129423.5214599IPR017930Myb domain
SMARTSM007173.0E-154997IPR001005SANT/Myb domain
PfamPF002491.5E-155093IPR001005SANT/Myb domain
CDDcd001672.57E-115393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQLAHVCPHM QLEIWVYIIY GGRCMHAGLK RTGKSCRLRW LNYLRPDVKR GDFTADEQLL  60
ILDLHSRWGN RWSKIAAHLP GRTDNEIKNY WRTRVQKHAK QLNCDVNSKR FKDAMRFLWM  120
PRLAERATAA AHHHPPSPSL TTCVLGGGMA ASSSSSALMK MLDDATVSNR SSCSPSSAVT  180
CSSSSCSSLT SVDTAHDDGG ARPHAASAAV AFTAADDDDY WGAATATTTT MQQQQQQNDQ  240
HYDFWSTASA LQHLCTAADH DITGWVQGFS DGGILSGSSS FWSLDDIWRM PQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-16319740106B-MYB
1gv2_A1e-1631913797MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-16319191151MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-16319191151MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-16319160120MYB TRANSFORMING PROTEIN
1mse_C1e-1631913797C-Myb DNA-Binding Domain
1msf_C1e-1631913797C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G217200.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284141e-145KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451276.20.0transcription factor JAMYB
SwissprotQ2QZJ87e-70JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A1Z5RJT30.0A0A1Z5RJT3_SORBI; Uncharacterized protein
STRINGSb05g026820.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-56myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]