PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G217400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 169aa    MW: 18172.6 Da    PI: 9.482
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G217400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.5e-141459351
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                          + GVr ++ +g ++AeIrd + +g  +r++lg+f+tae Aa a+++a+ 
  Sobic.005G217400.1.p 14 FIGVRPRP-WGTFAAEIRDSTRRG--ARVWLGTFDTAEAAALAYDQAAF 59
                          67***999.**********43343..*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.9E-251377IPR001471AP2/ERF domain
PROSITE profilePS5103219.9411371IPR001471AP2/ERF domain
PRINTSPR003676.7E-81425IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-191473IPR016177DNA-binding domain
CDDcd000181.24E-121448No hitNo description
Gene3DG3DSA:3.30.730.101.1E-251471IPR001471AP2/ERF domain
PfamPF008476.0E-101560IPR001471AP2/ERF domain
PRINTSPR003676.7E-83753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MTDDASSRGA TAFFIGVRPR PWGTFAAEIR DSTRRGARVW LGTFDTAEAA ALAYDQAAFA  60
APGAAAVFNF PVDCVRESLA PLELAATLGS PVLALKRRHC KRKHRRRRRR KSSSSSRSSP  120
LPSSNVSMAA PPQQQVISQC CSSIIELEDL GADYLDELLR VSCESTTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-23471272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195110KRRHCKRKHRRRRRRK
296102RRHCKRK
3101109RKHRRRRRR
4104110RRRRRRK
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G217400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317856.16e-74ethylene-responsive transcription factor ERF094
SwissprotQ8VYM04e-43ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A1Z5RJV21e-118A0A1Z5RJV2_SORBI; Uncharacterized protein
STRINGSb05g026843.11e-66(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.14e-20ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]