PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G224700.1.p
Common NameSb05g027360, SORBIDRAFT_05g027360
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 213aa    MW: 24088.1 Da    PI: 6.4998
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G224700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-143375246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          gr +++E+ l ++++ ++G+  W++Iar+++ gRt++++k++w +
  Sobic.005G224700.1.p 33 GRLSQQEERLVIELHSRWGNS-WSRIARRLP-GRTDNDIKNYWKT 75
                          7889***************99.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.3441226IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.6E-71239IPR009057Homeodomain-like
SuperFamilySSF466894.9E-191283IPR009057Homeodomain-like
PROSITE profilePS5129423.3972781IPR017930Myb domain
SMARTSM007171.8E-133179IPR001005SANT/Myb domain
PfamPF002495.0E-133375IPR001005SANT/Myb domain
CDDcd001674.92E-113675No hitNo description
Gene3DG3DSA:1.10.10.604.3E-184078IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDRGGGHATG LNRSGKSCRM RWVNYLHPSR KHGRLSQQEE RLVIELHSRW GNSWSRIARR  60
LPGRTDNDIK NYWKTRMRMK AQERETSMSP SSLTTYTSCL LDSNSPVDVM SCGDTHNNFS  120
SCIIGSALES TRTVDDGFVM DQIWREMETP LQAPALPQVI HQADEKTCSS IVPLCTPATT  180
AAMWDDQCPE VFWNMDAEEI RMLAPQFDCA ES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-16138137105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-16138137105C-Myb DNA-Binding Domain
1msf_C2e-16138137105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G224700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316575.11e-159myb-related protein MYBAS1 isoform X2
SwissprotQ53NK62e-69MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A1B6PU491e-158A0A1B6PU49_SORBI; Uncharacterized protein
STRINGSb05g027360.11e-147(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.21e-48myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]