PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G224700.4.p
Common NameSb05g027360, SORBIDRAFT_05g027360
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 194aa    MW: 22146 Da    PI: 5.2963
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G224700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-141456246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          gr +++E+ l ++++ ++G+  W++Iar+++ gRt++++k++w +
  Sobic.005G224700.4.p 14 GRLSQQEERLVIELHSRWGNS-WSRIARRLP-GRTDNDIKNYWKT 56
                          7889***************99.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.17E-15265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-20361IPR009057Homeodomain-like
PROSITE profilePS5129423.397862IPR017930Myb domain
SMARTSM007171.8E-131260IPR001005SANT/Myb domain
PfamPF002494.3E-131456IPR001005SANT/Myb domain
CDDcd001676.40E-111756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MRWVNYLHPS RKHGRLSQQE ERLVIELHSR WGNSWSRIAR RLPGRTDNDI KNYWKTRMRM  60
KAQERETSMS PSSLTTYTSC LLDSNSPVDV MSCGDTHNNF SSCIIGSALE STRTVDDGFV  120
MDQIWREMET PLQAPALPQV IHQADEKTCS SIVPLCTPAT TAAMWDDQCP EVFWNMDAEE  180
IRMLAPQFDC AES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-1326245105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-1326245105C-Myb DNA-Binding Domain
1msf_C7e-1326245105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G224700.4.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316574.11e-144myb-related protein MYBAS1 isoform X1
SwissprotQ53NK65e-62MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A1B6PU401e-143A0A1B6PU40_SORBI; Uncharacterized protein
TrEMBLA0A1B6PU491e-143A0A1B6PU49_SORBI; Uncharacterized protein
STRINGSb05g027360.11e-139(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.27e-41myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]