PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G224800.2.p
Common NameSb05g027370, SORBIDRAFT_05g027370
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 164aa    MW: 18627.2 Da    PI: 7.0158
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G224800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.8e-17243548
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Sobic.005G224800.2.p  2 SPQEERLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                          89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-11145IPR001005SANT/Myb domain
PROSITE profilePS5129424.881147IPR017930Myb domain
CDDcd001672.69E-12143No hitNo description
Gene3DG3DSA:1.10.10.601.4E-20244IPR009057Homeodomain-like
SuperFamilySSF466896.47E-13248IPR009057Homeodomain-like
PfamPF002493.2E-15242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSPQEERLII ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KMSMSSPSSS  60
CSSLTYQACH LDTVPVIGMS SGDTHNGGCV TSALENTQSV MDGYPMDQIW KEIEAPQAPA  120
LLGIAEGKEK TCSSIPCHLP SSAMWDYKYP EVFWKMEDQE IMM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.84450.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G224800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6524630.0EU652463.1 Saccharum officinarum MYB protein (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankEU6702360.0EU670236.1 Saccharum officinarum MYB transcription factor MYBAS1 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankHM1367800.0HM136780.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 1 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankHM1367810.0HM136781.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 2 (MYBAS1) mRNA, complete cds.
GenBankHM1367820.0HM136782.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 3 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankKM3874100.0KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced.
GenBankKM3874110.0KM387411.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 2 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317161.11e-119myb-related protein MYBAS1
SwissprotQ53NK63e-76MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLC5Y8G91e-119C5Y8G9_SORBI; Uncharacterized protein
STRINGSb05g027370.11e-120(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.14e-31myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]