PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G225700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 230aa    MW: 24806.7 Da    PI: 9.2772
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G225700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047127149123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ Cg++F++   L  H  +H
  Sobic.005G225700.1.p 127 FECQTCGRRFPTFQALGGHRTSH 149
                           89**********99998888777 PP
2zf-C2H212.20.00054169191123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C  Cg  Fs+   L  H+r+H
  Sobic.005G225700.1.p 169 HACATCGLGFSTGQALGGHMRRH 191
                           67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-7126191No hitNo description
PfamPF139121.0E-11126151IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118127154IPR007087Zinc finger, C2H2
SMARTSM003550.14127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
PfamPF139124.1E-9168192IPR007087Zinc finger, C2H2
SMARTSM003551.1169191IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536169196IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSSRIKRARD GDDDDDDAIS RGSAIVVDVP HHGEDDDDIH VVDEEEEEDQ RRRRRAACHV  60
LLSLSLSCRS SSSTSSPSTS CSIQDDQAAA ATGTGTGTGI APPPPLKLIK RRRRRRRRRG  120
LQVDDVFECQ TCGRRFPTFQ ALGGHRTSHL RRPAATKKPP QSSKAVLVHA CATCGLGFST  180
GQALGGHMRR HRLGRADSVG SGDVDLTQII VHGRPTSASS SLQLLNLFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111LKLIKRR
2109114KRRRRR
3110118RRRRRRRRR
4111118RRRRRRRR
5112118RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G225700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317868.11e-162zinc finger protein ZAT5-like
TrEMBLA0A1Z5RL321e-161A0A1Z5RL32_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-13C2H2 family protein