PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G226100.1.p
Common NameSb05g027450, SORBIDRAFT_05g027450
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 184aa    MW: 19354 Da    PI: 10.2288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G226100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000285880123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ Cg+ F++   L  H  +H
  Sobic.005G226100.1.p 58 FRCKTCGRAFPTFQALGGHRTSH 80
                          89**********99998888877 PP
2zf-C2H210.60.0018108130123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C  +F++   L  H+r+H
  Sobic.005G226100.1.p 108 HRCTTCAAVFPTGQALGGHMRRH 130
                           79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-115782IPR007087Zinc finger, C2H2
SMARTSM003550.125880IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.29E-558130No hitNo description
PROSITE profilePS5015710.0975880IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
PfamPF139121.7E-12107132IPR007087Zinc finger, C2H2
SMARTSM003550.093108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MATTTTERPT ATASNHTQLL RLYLSLSTTA SKVIAKKQHG GVICSHQQQQ HRAGGGAFRC  60
KTCGRAFPTF QALGGHRTSH KRPLVRAHGL DLLLGARPGK GAAATDVHRC TTCAAVFPTG  120
QALGGHMRRH RAAAAAAAFD FNVAVHGESE TAARVAVDAC LSGEMQDESE DDVAGPIRLF  180
KFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G226100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340459e-33AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK0624919e-33AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence.
GenBankAK1052269e-33AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence.
GenBankAP0149679e-33AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAY3058669e-33AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBankCP0126199e-33CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCT8333229e-33CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451308.11e-131zinc finger protein ZAT11
TrEMBLC5Y8H81e-129C5Y8H8_SORBI; Uncharacterized protein
STRINGSb05g027450.11e-130(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-21C2H2 family protein