PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G003850.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 193aa MW: 22420.6 Da PI: 10.2031

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G003850.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	44.8	4.1e-14	67	189	10	112
NAM 10 tdeelvveyLkkkvegkk.........lelee....vik.evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 t el+ e+L+ v k+ + + +i+ +++i+++ P++Lp v+ + ++ +fF+++ k+y+t++r++r+ Sobic.006G003850.1.p 67 TRPELI-EHLESMVLVKEqggsrahalI---NhfipTIEgDIGICYTYPKNLP-GVTRDGHSRHFFHRTTKAYPTSTRTRRKimsehgq 150 566888.778888777765665554432...133223441458********.556677899**************88999999 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfykgr 112 + ++ W+ tg++++v + + +++g k+Lv+++ + Sobic.006G003850.1.p 151 cssedVGEAHWHRTGNTRPVNV-GCKQKGFIKILVLHNVK 189 9998888999********.9999*******9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	10.864	58	192	IPR003441	NAC domain
SuperFamily	SSF101941	7.85E-12	95	186	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MFFFFSEHVV FTCKFLLQSS PHQSFLVPGR FRHHDRQQRH RRERFPLTCP NCNYLDFQPV 60 SSLLHRTRPE LIEHLESMVL VKEQGGSRAH ALINHFIPTI EGDIGICYTY PKNLPGVTRD 120 GHSRHFFHRT TKAYPTSTRT RRKIMSEHGQ CSSEDVGEAH WHRTGNTRPV NVGCKQKGFI 180 KILVLHNVKH VE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G003850.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002447408.2	1e-73	NAC domain-containing protein 73
Swissprot	Q9M0F8	1e-38	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1Z5RBB3	1e-140	A0A1Z5RBB3_SORBI; Uncharacterized protein
STRING	Sb06g000533.1	9e-68	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	5e-41	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Sobic.006G003850.1.p

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]