PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G004800.1.p
Common NameSb06g000610, SORBIDRAFT_06g000610
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GeBP
Protein Properties Length: 249aa    MW: 27128.9 Da    PI: 9.7649
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G004800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573446.1e-1439128597
                DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                           r+wse De+ +L Gl  ++a +g +p     +     ++  +++++ +++ eK+rrL+ K+ + ++    g  p+ +  ++   +els+
  Sobic.006G004800.1.p  39 RVWSEADEVRILEGLAAYAAAHGEEPRRSQLHAALDGRGLDKAEFTVTEIYEKVRRLRIKYANLRSA---GGVPVPAGGDEARKYELSM 124
                           9***********************999966666666788899**********************999...9999999************ PP

                DUF573  94 kiWg 97 
                            iWg
  Sobic.006G004800.1.p 125 AIWG 128
                           ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-1839128IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MPPPTGAPHS PSADNLLVPW VASQPGADGR KKPAVATGRV WSEADEVRIL EGLAAYAAAH  60
GEEPRRSQLH AALDGRGLDK AEFTVTEIYE KVRRLRIKYA NLRSAGGVPV PAGGDEARKY  120
ELSMAIWGDR PLNVPKKVGA SRATKARANA NAAASTRVRR GVEELQGMYP NLALAVEGIT  180
DDDSLRPMVK RAFQLISDEQ ARELDAKMKK QMTMEAQMTL NQTALRNQVL DVLTNILSCL  240
YHQHKTQD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G004800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0842597e-99BT084259.1 Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds.
GenBankJX4285247e-99JX428524.1 Zea mays subsp. mays clone pUT3123 GBP11 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446025.11e-172STOREKEEPER protein
TrEMBLC5YBK90.0C5YBK9_SORBI; Uncharacterized protein
STRINGSb06g000610.11e-171(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1462199
Representative plantOGRP1703022