PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G018600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 223aa    MW: 23886.2 Da    PI: 8.8921
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G018600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-0593115123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C++C + F++   L  H+++H
  Sobic.006G018600.1.p  93 YTCGYCRREFRSAQALGGHMNVH 115
                           9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-691120No hitNo description
PROSITE profilePS5015711.07493120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSPLTPTILR FTVITCISLG FIQVSCRGES LAAYTTRPHR RPPTMESSGD HGRRRLKPLQ  60
PWMTTTTTPA GHNNFSLAAG CFPWPPPLPS SCYTCGYCRR EFRSAQALGG HMNVHRRDRA  120
RLRQCCSASA AHHHHSRAPL PNLNFSPPHR AAAADPVIYS FFSTTTSTTT SAAAVATNKV  180
AALEVSLELG IGVCAGGGSG RGGVVVEEDG VDLELRLGCT WE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G018600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591933e-51EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318484.13e-74zinc finger protein 11
TrEMBLA0A1B6PJH81e-161A0A1B6PJH8_SORBI; Uncharacterized protein
STRINGSb06g001730.11e-140(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.17e-19zinc finger protein 11