PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G022000.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 525aa    MW: 58862.9 Da    PI: 10.3342
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G022000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3406.8e-13481123199
                           .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           + ++t  + ++ g++W+v++   + +++ +l++GW eF  a+g+  g fvv++++g  ++ l+vkvf++
  Sobic.006G022000.3.p  48 AAERTALVVSPFGKVWRVEV--GRDGDGAFLGRGWAEFLAAHGVGLGWFVVLRHEG--GGALTVKVFDT 112
                           455689999***********..999999*************************765..7778*****97 PP
2B355.31.2e-17272355186
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                           ++k+ ++ ++l++ +l+l+kkf++ +g    +++tl+ e  s rsW v+     ++g+ y+l++GWk+F+++n+Lk+gD ++F  ++
  Sobic.006G022000.3.p 272 WIKKKINTYALER-LLSLSKKFCNWIGFRFSCTITLKTEIDSTRSWLVRG--AAYKGScYILGEGWKSFCQDNRLKAGDLCTFNIIE 355
                           6789999999998.5********99988866766666666777*******..77777779***********************9765 PP
3B358.31.4e-18431512386
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           +++++ ++ ++ rl+l   f++++g+ +++++tl+    s++sW+v   +++k+g y+++ GW++F+++n+Lk+gD+++F +++
  Sobic.006G022000.3.p 431 QKEMNTNSIAR-RLSLAPAFCKKIGLRQRCTITLKTSINSSNSWRVGG-HWQKDGNYTIELGWQKFCRENELKVGDVCTFNVIE 512
                           45556666665.6**************99987777777999******9.7899999************************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.6E-519113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-1320114IPR015300DNA-binding pseudobarrel domain
CDDcd100179.43E-920111No hitNo description
SuperFamilySSF1019361.61E-1324115IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-1049112IPR003340B3 DNA binding domain
PROSITE profilePS508639.99651113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-4137197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-17271366IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-8273367IPR003340B3 DNA binding domain
PfamPF023626.6E-13274355IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17275365IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-11286351No hitNo description
PROSITE profilePS5086311.434303367IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-16424522IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.616428524IPR003340B3 DNA binding domain
CDDcd100178.04E-11430508No hitNo description
SMARTSM010190.0016430524IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-17431521IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-14438518IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MPLPSDPGPR PAAPAMAKQF KVLLPPFHKL RISDELAGCF DAGEGEGAAE RTALVVSPFG  60
KVWRVEVGRD GDGAFLGRGW AEFLAAHGVG LGWFVVLRHE GGGALTVKVF DTSLCIKEFG  120
APAAVMTSRT SKGVICKPQF IRIFHPYLSE KMILPARFVK NYVTEECLNS KTAVILSPLG  180
KFWHIELKND KSGNMVFKFK AFGLGGCQKD FRHQNAGIQL NTEKRQETHS SIRKRKSNDN  240
KSSSEENKRP KSSVTSPSLK LQEPYQMGTT SWIKKKINTY ALERLLSLSK KFCNWIGFRF  300
SCTITLKTEI DSTRSWLVRG AAYKGSCYIL GEGWKSFCQD NRLKAGDLCT FNIIETTLWH  360
VTITRCKHKS TLADTFKQKK SPCSSSRDHK TNKGSSSSEE AKEPKISMTS LSKVRSFTRC  420
VYDIGPPSWI QKEMNTNSIA RRLSLAPAFC KKIGLRQRCT ITLKTSINSS NSWRVGGHWQ  480
KDGNYTIELG WQKFCRENEL KVGDVCTFNV IETKLWHVVI THRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G022000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.20.0putative B3 domain-containing protein Os04g0346900
TrEMBLA0A1Z5RBP10.0A0A1Z5RBP1_SORBI; Uncharacterized protein
STRINGSb06g002075.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-10B3 family protein