PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G025000.3.p

Common Name

Sb06g002260, SORBIDRAFT_06g002260

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

TCP

Protein Properties

Length: 178aa MW: 18197.4 Da PI: 8.9137

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G025000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.1	2e-31	58	134	8	81
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssss 81 + ++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ ++ss+ + Sobic.006G025000.3.p 58 SVDRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGVTTEEAPsvlVPVSSVAA 134 569*******************************************************5554422212333333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-27	57	137	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.05	58	112	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MSSSSELYNL VPAPQTLNPP APAAADLSSS TAVAAAAAAA PGDGALRGRV RRPVGSSSVD 60 RHAKVAGRGR RVRIPAMVAA RVFQLTRELG HRSDGETIEW LLRQAEPSII AATGTGVTTE 120 EAPSVLVPVS SVAATASMTP VSYSYYTALL MQPPTAKESP PASAYVSGTA AEENNNN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269\|PubMed:9338963}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G025000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726999	1e-118	KJ726999.1 Zea mays clone pUT3971 TCP transcription factor (TCP40) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002446141.1	1e-122	transcription factor PCF1
Swissprot	O23875	3e-52	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	C5YCQ5	1e-120	C5YCQ5_SORBI; Uncharacterized protein
STRING	Sb06g002260.1	1e-121	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	6e-25	TCP family protein

Link Out ? help Back to Top
Phytozome	Sobic.006G025000.3.p
Entrez Gene	8067752