PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G026250.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 745aa    MW: 86474.1 Da    PI: 6.011
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G026250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.35.9e-14146225289
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           f n +++ +G++v k +++k+      +k +fvC+++ k++e +++  k+rr+ a  +t+C  k++vk+   ++we++ + +eHnH+l
  Sobic.006G026250.1.p 146 FINVHGQVTGYTVIKGTNYKH------KKIRFVCNRSRKTKEADTR-PKKRRRDAIVHTQCPMKVTVKLV-AERWEIIGVMNEHNHPL 225
                           667788899999999999998......5678***********9999.99999******************.9**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-11146225IPR004330FAR1 DNA binding domain
PfamPF105514.5E-29350442IPR018289MULE transposase domain
PROSITE profilePS509669.235630666IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-4641668IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MAAEKDVDMT MVAMESTSRG DSDLEERYGI IHTPEHEAGE LGNYTTEGSL QSPTFLLECT  60
ETEADILSEI QTPEAGSTFV EELDQENGTT VLNEGDEDPN DFQKDKAEAE VDGDEDYMFP  120
SPEELEKSRA PEVGMIFSTL QEAHRFINVH GQVTGYTVIK GTNYKHKKIR FVCNRSRKTK  180
EADTRPKKRR RDAIVHTQCP MKVTVKLVAE RWEIIGVMNE HNHPLWSSPL LTRFFMSHKH  240
MSEEERHFSR VLQESKIKPT KIMEIFRKLQ GRFKNIPVSK VDVNNLKQSG RVMKTRNTDI  300
GSTLEHVRKS QKEQPGFYYA MKTDEDSTIR SIFWTDVRAR LDYALFGDFI HINTTYRTNA  360
YNMPFASLIG INGHGKPTVF GWALLENDEA ETFSWLFRTF LDVMDDKKPS IIITRQDSAM  420
QKTIAEVFPT VFHRFSMWHV MREAAVEFGG FMANRPGMDA EMSCLVSNSL TPEDFENGWK  480
AMLKKYNAEI NAHLKQMYWT RSMWVPVYFK HVFCPFIRSF GGCESTHSIF KDYVLQEDNI  540
ETFIGQYNIF QEQAVSTDRF ESSMQKPIYC TRQPIERLAA EIYTVGLFLK FQKELLDASA  600
FNVFEKEKDR IYTVKRVLEY EDAEFLNDSF SIDVDMEKKI FNCICSKFER DGILCCHVLR  660
LFTQFGINEI PEHYIRQRWT KKFREQELQK LCTEKTGSDA SQNVLRYAML MNKTADTYAS  720
VSRDPNRSQL FLEELERIQQ KLSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G026250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319625.10.0protein FAR1-RELATED SEQUENCE 9 isoform X2
TrEMBLA0A1Z5RBT40.0A0A1Z5RBT4_SORBI; Uncharacterized protein
STRINGSb06g002515.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1203336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-81FAR1-related sequence 5