PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G050900.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Protein Properties

Length: 195aa MW: 21023.3 Da PI: 9.8034

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G050900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.2	3.3e-14	81	171	4	98
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 +l +s+v++ ++v+p++ a + + t+ +++grsWe+++ +++++ l++GW++F+ +ngL gD +vF+l g+ ++ Sobic.006G050900.1.p 81 ILCKSHVNQPFQVVVPRSLAPFLPAT-TVPATV---TRHGRSWEMRF--TGGRQIQRLEAGWRGFALDNGLMLGDGCVFELLdGKpEGV 163 67789999999999999999555322.233334...48*******..9999999**********************652666666 PP ..EEEEE- CS B3 91 elvvkvfr 98 ++v+v+r Sobic.006G050900.1.p 164 VFRVQVLR 171 66666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.31E-16	75	176	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.6E-15	75	172	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.75E-14	76	171	No hit	No description
PROSITE profile	PS50863	12.182	78	173	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.4E-12	79	169	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDGWFFLLSS VLTHQSSKSL RRPSRKVVMS KGKSVAMSSA GHSAGASPTD GGADPLSMSE 60 TPCAMQPGVL PLLGRPYFTC ILCKSHVNQP FQVVVPRSLA PFLPATTVPA TVTRHGRSWE 120 MRFTGGRQIQ RLEAGWRGFA LDNGLMLGDG CVFELLDGKP EGVVFRVQVL RAHIPEEIRE 180 RAGGYTSSTP ILID*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G050900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954164	1e-173	EU954164.1 Zea mays clone 1457632 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319641.1	1e-141	B3 domain-containing protein Os04g0386900
Swissprot	Q7XLP4	9e-64	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	A0A1B6PKA3	1e-140	A0A1B6PKA3_SORBI; Uncharacterized protein
STRING	GRMZM2G126194_P01	2e-88	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45
Representative plant	OGRP7665	9	16

Link Out ? help Back to Top
Phytozome	Sobic.006G050900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]